Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two Colletotrichum spp., the Causal Agent of Anthracnose in Rubber Tree.
Identifieur interne : 000089 ( Main/Exploration ); précédent : 000088; suivant : 000090Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two Colletotrichum spp., the Causal Agent of Anthracnose in Rubber Tree.
Auteurs : Xianbao Liu [République populaire de Chine] ; Boxun Li [République populaire de Chine] ; Yang Yang [République populaire de Chine] ; Jimiao Cai [République populaire de Chine] ; Tao Shi [République populaire de Chine] ; Xiaolan Zheng [République populaire de Chine] ; Guixiu Huang [République populaire de Chine]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
Colletotrichum siamense and Colletotrichum australisinense cause Colletotrichum leaf disease that differ in their symptoms in rubber tree (Hevea brasiliensis), and pathogenicity of these two fungal species is also not identical on different cultivars of rubber tree. This divergence is often attributed to pathogen virulence factors, namely carbohydrate-active enzymes (CAZymes), secondary metabolites (SM), and small-secreted protein (SSP) effectors. The draft genome assembly and functional annotation of potential pathogenicity genes of both species obtained here provide an important and timely genomic resource for better understanding the biology and lifestyle of Colletotrichum spp. This should pave the way for designing more efficient disease control strategies in plantations of rubber tree. In this study, the genes associated with these categories were manually annotated in the genomes of C. australisinense GX1655 and C. siamense HBCG01. Comparative genomic analyses were performed to address the evolutionary relationships among these gene families in the two species. First, the size of genome assembly, number of predicted genes, and some of the functional categories differed significantly between the two congeners. Second, from the comparative genomic analyses, we identified some specific genes, certain higher abundance of gene families associated with CAZymes, CYP450, and SM in the genome of C. siamense, and Nep1-like proteins (NLP) in the genome of C. australisinense.
DOI: 10.3389/fmicb.2020.01484
PubMed: 32793128
PubMed Central: PMC7385191
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Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Li, Boxun" sort="Li, Boxun" uniqKey="Li B" first="Boxun" last="Li">Boxun Li</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Yang" sort="Yang, Yang" uniqKey="Yang Y" first="Yang" last="Yang">Yang Yang</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Cai, Jimiao" sort="Cai, Jimiao" uniqKey="Cai J" first="Jimiao" last="Cai">Jimiao Cai</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Shi, Tao" sort="Shi, Tao" uniqKey="Shi T" first="Tao" last="Shi">Tao Shi</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Zheng, Xiaolan" sort="Zheng, Xiaolan" uniqKey="Zheng X" first="Xiaolan" last="Zheng">Xiaolan Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Guixiu" sort="Huang, Guixiu" uniqKey="Huang G" first="Guixiu" last="Huang">Guixiu Huang</name><affiliation wicri:level="1"><nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou</wicri:regionArea><wicri:noRegion>Haikou</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Colletotrichum siamense</i> and <i>Colletotrichum australisinense</i> cause <i>Colletotrichum</i> leaf disease that differ in their symptoms in rubber tree (<i>Hevea brasiliensis</i>), and pathogenicity of these two fungal species is also not identical on different cultivars of rubber tree. This divergence is often attributed to pathogen virulence factors, namely carbohydrate-active enzymes (CAZymes), secondary metabolites (SM), and small-secreted protein (SSP) effectors. The draft genome assembly and functional annotation of potential pathogenicity genes of both species obtained here provide an important and timely genomic resource for better understanding the biology and lifestyle of <i>Colletotrichum</i> spp. This should pave the way for designing more efficient disease control strategies in plantations of rubber tree. In this study, the genes associated with these categories were manually annotated in the genomes of <i>C. australisinense</i> GX1655 and <i>C. siamense</i> HBCG01. Comparative genomic analyses were performed to address the evolutionary relationships among these gene families in the two species. First, the size of genome assembly, number of predicted genes, and some of the functional categories differed significantly between the two congeners. Second, from the comparative genomic analyses, we identified some specific genes, certain higher abundance of gene families associated with CAZymes, CYP450, and SM in the genome of <i>C. siamense</i>, and Nep1-like proteins (NLP) in the genome of <i>C. australisinense.</i></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32793128</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two <i>Colletotrichum</i> spp., the Causal Agent of Anthracnose in Rubber Tree.</ArticleTitle><Pagination><MedlinePgn>1484</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.01484</ELocationID><Abstract><AbstractText><i>Colletotrichum siamense</i> and <i>Colletotrichum australisinense</i> cause <i>Colletotrichum</i> leaf disease that differ in their symptoms in rubber tree (<i>Hevea brasiliensis</i>), and pathogenicity of these two fungal species is also not identical on different cultivars of rubber tree. This divergence is often attributed to pathogen virulence factors, namely carbohydrate-active enzymes (CAZymes), secondary metabolites (SM), and small-secreted protein (SSP) effectors. The draft genome assembly and functional annotation of potential pathogenicity genes of both species obtained here provide an important and timely genomic resource for better understanding the biology and lifestyle of <i>Colletotrichum</i> spp. This should pave the way for designing more efficient disease control strategies in plantations of rubber tree. In this study, the genes associated with these categories were manually annotated in the genomes of <i>C. australisinense</i> GX1655 and <i>C. siamense</i> HBCG01. Comparative genomic analyses were performed to address the evolutionary relationships among these gene families in the two species. First, the size of genome assembly, number of predicted genes, and some of the functional categories differed significantly between the two congeners. Second, from the comparative genomic analyses, we identified some specific genes, certain higher abundance of gene families associated with CAZymes, CYP450, and SM in the genome of <i>C. siamense</i>, and Nep1-like proteins (NLP) in the genome of <i>C. australisinense.</i></AbstractText><CopyrightInformation>Copyright © 2020 Liu, Li, Yang, Cai, Shi, Zheng and Huang.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Xianbao</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Boxun</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Yang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cai</LastName><ForeName>Jimiao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shi</LastName><ForeName>Tao</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Xiaolan</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Guixiu</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences (CATAS), Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>07</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Colletotrichum</Keyword><Keyword MajorTopicYN="N">Hevea brasiliensis</Keyword><Keyword MajorTopicYN="N">cell wall degrading enzymes</Keyword><Keyword MajorTopicYN="N">genome</Keyword><Keyword MajorTopicYN="N">necrosis- and ethylene- inducing peptides</Keyword><Keyword MajorTopicYN="N">secondary metabolites associated genes</Keyword><Keyword MajorTopicYN="N">symptoms</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>02</Month><Day>07</Day></PubMedPubDate><PubMedPubDate 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Y" first="Yang" last="Yang">Yang Yang</name><name sortKey="Zheng, Xiaolan" sort="Zheng, Xiaolan" uniqKey="Zheng X" first="Xiaolan" last="Zheng">Xiaolan Zheng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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